PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015873700.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family GRAS
Protein Properties Length: 312aa    MW: 35069.2 Da    PI: 6.5203
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015873700.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS281.23.1e-8622309138374
            GRAS 138 gppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrll.................. 214
                     ++  +RiTgv++    ++e l ++++rL++ Ae+l++pf+fn+ ++++le+l++e+Lrvk+gEala+++ lqlh+ll                  
  XP_015873700.1  22 KTEGIRITGVHQ----QREVLDQMAHRLTEEAEKLDIPFQFNP-IVSKLENLDVEQLRVKTGEALAISSDLQLHSLLasddellrkksplpskti 111
                     45569*******....9**************************.7999*********************************************** PP

            GRAS 215 ..........................................desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysal 267
                                                                 sv+     +++L+ +++l Pk++v++eq+++hn++s++er+leal+ y+al
  XP_015873700.1 112 ngthlsrvlqmnqstlgellekdlvngyspspdsasssplslTTSVK----MESFLNSLWGLTPKIMVITEQDSNHNGSSLMERLLEALYSYAAL 202
                     **********************************9976554444444....556***************************************** PP

            GRAS 268 fdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgW 362
                     fd+le+++ r+s er kvE++l+g+ei+n++acegaer+erhe+l kW +rl++aGF++vpls++ + qa++ll+ ++ dgyr++eesgs++++W
  XP_015873700.1 203 FDCLESTMTRTSVERLKVEKMLFGEEIKNIIACEGAERKERHEKLDKWIQRLDSAGFGNVPLSYYGMLQARRLLQGYGCDGYRIKEESGSVLICW 297
                     *********************************************************************************************** PP

            GRAS 363 kdrpLvsvSaWr 374
                     +drpL+s+SaWr
  XP_015873700.1 298 QDRPLFSISAWR 309
                     ***********8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098533.4921289IPR005202Transcription factor GRAS
PfamPF035141.1E-8322309IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MVFGSTSKSF LAIPILTPLG NKTEGIRITG VHQQREVLDQ MAHRLTEEAE KLDIPFQFNP  60
IVSKLENLDV EQLRVKTGEA LAISSDLQLH SLLASDDELL RKKSPLPSKT INGTHLSRVL  120
QMNQSTLGEL LEKDLVNGYS PSPDSASSSP LSLTTSVKME SFLNSLWGLT PKIMVITEQD  180
SNHNGSSLME RLLEALYSYA ALFDCLESTM TRTSVERLKV EKMLFGEEIK NIIACEGAER  240
KERHEKLDKW IQRLDSAGFG NVPLSYYGML QARRLLQGYG CDGYRIKEES GSVLICWQDR  300
PLFSISAWRC RK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A5e-2815309127375GRAS family transcription factor containing p
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015873700.10.0PREDICTED: scarecrow-like protein 3
SwissprotQ9LPR81e-145SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A061GTH91e-175A0A061GTH9_THECC; Scarecrow-like 3
STRINGGLYMA11G10170.31e-169(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.11e-142scarecrow-like 3